Stem-loop sequence ath-MIR5029

Accession

MI0017899 (change log)

Description

Arabidopsis thaliana miR5029 stem-loop

Literature search

1 open access papers mention ath-MIR5029
(2 sentences)

Stem-loop

          -a            cuuaugu                                   aga   aaau    uggauggagaguaaucgauuca 
5' gaaugag  augaugaugcau       aacgaucgggaaugagagagaacacugcaaauuag   ucc    ucaa                      g
   |||||||  ||||||||||||       |||||||||||||||||||||||||||||||||||   |||    ||||                      c
3' uuuauuu  uacuauugcgug       uugcuagcccuuacucucucuugugacguuuaauu   ggg    aguu                      u
          ag            ------u                                   --g   -aau    acgagaaugguuaaugcuaggu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr5: 12268507-12268697 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0017899

Mature sequence ath-miR5029

• Accession: MIMAT0020535
• Sequence: 38 - aaugagagagaacacugcaaa - 58
• Evidence: experimental; Illumina [1]

References

1. PMID:21357774 "MicroRNA activity in the Arabidopsis male germline" Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD J Exp Bot. 62:1611-1620(2011).