miRBase entry: ath-MIR5025

Stem-loop ath-MIR5025


Accession
MI0017895
Description
Arabidopsis thaliana ath-MIR5025 precursor miRNA


Sequence

ggcucguuagaaaaagcuacuuACUGUAUAUAUGUAAGUGACAuaaucuuuaaaaaauauguagaggaagaaggaugcuaucuccaaagauuaugucacuuacauauauacaguaaguaacuuugcauccagaacguuauauuaacaacuuuguc
....((((.((.((((.((((((((((((((((((((((((((((((((((..............(((.((((....)).))))))))))))))))))))))))))))))))))))))).))))...))...))))...................

Structure
---------------ggcu    --a  --a    c                                  aaaaaauauguaga   a  -  g 
                   cguu   ga   aaag uacuuACUGUAUAUAUGUAAGUGACAuaaucuuu              gga ga ag a
                   ||||   ||   |||| ||||||||||||||||||||||||||||||||||              ||| || ||  
                   gcaa   cu   uuuc augaaugacauauauacauucacuguauuagaaa              ccu cu uc u
cuguuucaacaauuauauu    gac  acg    a                                  --------------   -  a  g 


Annotation confidence Not enough data
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Genome context
chr1: 16993891-16994045 [+]

Database links

Mature ath-miR5025

Accession MIMAT0020531
Description Arabidopsis thaliana ath-miR5025 mature miRNA
Sequence 23 - ACUGUAUAUAUGUAAGUGACA - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620