Stem-loop ath-MIR5018

Accession

MI0017886

Description

Arabidopsis thaliana ath-MIR5018 precursor miRNA

Sequence

uaugacaacuuccaccaauugguaugucccUUAAAGCUCCACCAUGAGUCCAAUaucuacgacaguucuuguagaaguagugcgguugagucucacuguacuaguuguaauaaaaaaaaacuuuuugaugucaagaugugauucugauaacacuaaguuuuguuauuauaacaccuacaauaagacucaaccucgcuacuucugcuagaauugucauagauauuagacucguaguggaguuuuaagaaaaguaccaauugauggaaguugucgua
((((((((((((((.((((((((((....(((((((((((((.(((((((.((((((((.(((((((((.((((((((((((.((((((((((...((((...((((((((((...(((((((..((.(((((.((......))))))).))..))))))).))))))))))...))))...)))))))))).)))))))))))).))))))))).)))))))).))))))).)))))))))))))....)))))))))).))))))))))))))

Structure

              c          gucc             C       C        c         u            c          cac    cua          aaa       uu  a     a  ug 
uaugacaacuucca caauugguau    cUUAAAGCUCCAC AUGAGUC AAUaucua gacaguucu guagaaguagug gguugagucu   ugua   guuguaauaa   aaaacuu  ug uguca ga  u
|||||||||||||| ||||||||||    ||||||||||||| ||||||| |||||||| ||||||||| |||||||||||| ||||||||||   ||||   ||||||||||   |||||||  || ||||| ||   
augcuguugaaggu guuaaccaug    gaauuuugaggug ugcucag uuauagau cuguuaaga cgucuucaucgc ccaacucaga   acau   caauauuauu   uuuugaa  ac auagu cu  g
              a          aaaa             a       a        a         u            u          aua    cca          --g       uc  a     -  ua 

Annotation confidence Not enough data

Genome context

chr1: 24543740-24544014 [-]

Mature ath-miR5018

• Accession: MIMAT0020522
• Description: Arabidopsis thaliana ath-miR5018 mature miRNA
• Sequence: 31 - UUAAAGCUCCACCAUGAGUCCAAU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620