miRBase entry: ath-MIR5016

Stem-loop ath-MIR5016


Accession
MI0017884
Description
Arabidopsis thaliana ath-MIR5016 precursor miRNA


Sequence

ggagauuuuguucccugaguuucagucuacaaagaauccauaacgaugacuucguuuuucggucguuaaauuagguaaauauuuuugaccauaucgaaauacaaagucauccacauuuagauguggucaaaaauaucuaccugauuaauggacggaaugacaaagucaUUCUUGUGGAUUCCUUGGAAAuugaaugucaaggaacagauguucu
((((..((((((((.(((..((((((...(((.((((((((((.((((((((.(((.(((.(((....(((((((((.(((((((((((((((((.((((..............)))).))))))))))))))))).)))))))))....))).))).))).)))))))).)))))))))).)))...))))))..))).))))))))..))))

Structure
    au        c   gu      cua   a          c        c   u   g   guua         a                 g    acaaag 
ggag  uuuguucc uga  uucagu   caa gaauccauaa gaugacuu guu uuc guc    aauuaggua auauuuuugaccauauc aaau      u
||||  |||||||| |||  ||||||   ||| |||||||||| |||||||| ||| ||| |||    ||||||||| ||||||||||||||||| ||||       
ucuu  agacaagg acu  aaguuA   GUU CUUAGGUGUU UUacugaa cag aag cag    uuaguccau uauaaaaacugguguag uuua      c
    gu        a   gu      AAG   C          C        a   u   g   guaa         c                 a    caccua 


Annotation confidence Not enough data
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Genome context
chr2: 9919984-9920197 [+]

Database links

Mature ath-miR5016

Accession MIMAT0020520
Description Arabidopsis thaliana ath-miR5016 mature miRNA
Sequence 169 - UUCUUGUGGAUUCCUUGGAAA - 189
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620