miRBase entry: ath-MIR5014a

Stem-loop ath-MIR5014a


Accession
MI0017882
Description
Arabidopsis thaliana ath-MIR5014a precursor miRNA
Gene family
MIPF0001634; MIR5014


Sequence

auuuuuuacuauuugauucguACACUUAGUUUUGUACAACAUuuuuaguguacaaauaaauaaauguacacagcguacacuuacaucuguacacuaaaagugUUGUACAAAUUUAAGUGUACGaaucaaacuaugaaaagu
((((((((...((((((((((((((((((.((((((((((((((((((((((((.((...(((.(((((.....))))).))).)).)))))))))))))))))))))))).))))))))))))))))))...))))))))

Structure
        cua                  U                        a  aaa   a     a 
auuuuuua   uuugauucguACACUUAG UUUGUACAACAUuuuuaguguaca au   uaa uguac c
||||||||   |||||||||||||||||| |||||||||||||||||||||||| ||   ||| ||||| a
ugaaaagu   aaacuaaGCAUGUGAAUU AAACAUGUUgugaaaaucacaugu ua   auu acaug g
        auc                  U                        c  --c   c     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 24553909-24554049 [+]

Database links

Mature ath-miR5014a-3p

Accession MIMAT0020518
Description Arabidopsis thaliana ath-miR5014a-3p mature miRNA
Sequence 103 - UUGUACAAAUUUAAGUGUACG - 123
Evidence experimental
Illumina [1]

Mature ath-miR5014a-5p

Accession MIMAT0021047
Description Arabidopsis thaliana ath-miR5014a-5p mature miRNA
Sequence 22 - ACACUUAGUUUUGUACAACAU - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 21357774
    MicroRNA activity in the Arabidopsis male germline
    "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
    "J Exp Bot (2011) 62:1611-1620

  2. PubMed ID: 21940835
    High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
    "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
    "Genome Res (2012) 22:163-176