miRBase entry: dme-mir-4966

Stem-loop dme-mir-4966


Accession
MI0017752
Description
Drosophila melanogaster dme-mir-4966 precursor miRNA

Literature search
1 open access papers mention dme-mir-4966
(1 sentences)

Sequence

405 reads, 247 reads per million, 18 experiments
gcugugugacaacaaacuugucggcacuggagUACUAAAUAUAUUGCACAUGUUcaugcaUGUUCAACAUAUUUAGCACUCAaguaccgaaaaaugaacaacgaaacgaaaaauaacacgaacauca
..((((((((((.....)))))((.(((.((((.((((((((.(((.((((((....)))))).))).)))))))).)))).))).))...........................))))).......

Structure
-----gc     ------------gacaacaaacuuguc  c   g    A        A   C      U 
       ugugu                           gg acu gagU CUAAAUAU UUG ACAUGU c
       |||||                           || ||| |||| |||||||| ||| ||||||  
       gcaca                           cc uga CUCA GAUUUAUA AAC UGUacg a
acuacaa     auaaaaagcaaagcaacaaguaaaaag  a   A    C        C   U      u 


Annotation confidence High
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Genome context
chrX: 19558370-19558496 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from dme-mir-4966
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-4966-5p

Accession MIMAT0020190
Description Drosophila melanogaster dme-miR-4966-5p mature miRNA
Sequence 33 - UACUAAAUAUAUUGCACAUGUU - 54
Evidence experimental
Illumina [1]
Database links

Mature dme-miR-4966-3p

Accession MIMAT0020191
Description Drosophila melanogaster dme-miR-4966-3p mature miRNA
Sequence 61 - UGUUCAACAUAUUUAGCACUCA - 82
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215