miRBase entry: dme-mir-4963

Stem-loop dme-mir-4963


Accession
MI0017749
Description
Drosophila melanogaster dme-mir-4963 precursor miRNA

Literature search
1 open access papers mention dme-mir-4963
(1 sentences)

Sequence

50 reads, 5 reads per million, 26 experiments
cuguaggaaauuuuuugggguacuucuGGUUUCAUAACGCAGAGAAUCaucagcgugaaggaaugAUUCUCUGCGGGCUGGAACCAGaaguccugcaaauguucuuuua
....(((((....((((.((.(((((((((((((...(((((((((((((...(......).)))))))))))))...))))))))))))).)).))))..)))))...

Structure
cugu     auuu    g  u             UAA             cag gu 
    aggaa    uuug gg acuucuGGUUUCA   CGCAGAGAAUCau   c  g
    |||||    |||| || |||||||||||||   |||||||||||||   |   
    uucuu    aaac uc ugaaGACCAAGGU   GCGUCUCUUAgua   g  a
-auu     --gu    g  c             CGG             --a ga 


Annotation confidence Not enough data
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Genome context
chrX: 5790753-5790861 [+]

Database links

Mature dme-miR-4963-5p

Accession MIMAT0020185
Description Drosophila melanogaster dme-miR-4963-5p mature miRNA
Sequence 28 - GGUUUCAUAACGCAGAGAAUC - 48
Evidence experimental
Illumina [1]

Mature dme-miR-4963-3p

Accession MIMAT0020186
Description Drosophila melanogaster dme-miR-4963-3p mature miRNA
Sequence 66 - AUUCUCUGCGGGCUGGAACCAG - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21177969
    Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
    "Genome Res (2011) 21:203-215