Stem-loop sequence bfl-mir-4884

Accession

MI0017653 (change log)

Description

Branchiostoma floridae miR-4884 stem-loop

Stem-loop

   --    u g  g              uca    gucug 
5'   caug g ag aggaaagacacagg   ugau     u
     |||| | || ||||||||||||||   ||||     g
3'   guac c uc uccuuucugugucu   acug     u
   gg    - g  g              -cg    ucuuc 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666631.1: 1697024-1697098 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-4884

• bfl-mir-4884: GG666631.1: 1697024-1697098 [+]
• bfl-mir-4882b: GG666631.1: 1699499-1699583 [+]
• bfl-mir-4882c: GG666631.1: 1699784-1699878 [+]
• bfl-mir-4882a: GG666631.1: 1699928-1700001 [+]

Database links

• miRBase Tracker:MI0017653

Mature sequence bfl-miR-4884

• Accession: MIMAT0020470
• Sequence: 48 - agcucugugucuuuccugcugc - 69
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).