Stem-loop sequence bfl-mir-4882c

Accession

MI0017651 (change log)

Description

Branchiostoma floridae miR-4882c stem-loop

Stem-loop

   ----      c  a  a   cuauagua           u     gaagag 
5'     gucaca ug uc cac        uaggguuucuc ccugu      a
       |||||| || || |||        ||||||||||| |||||       
3'     cagugu ac ag gug        gucccaaagag ggaca      c
   uagu      u  c  a   -----aac           c     aagaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666631.1: 1699784-1699878 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-4882c

• bfl-mir-4884: GG666631.1: 1697024-1697098 [+]
• bfl-mir-4882b: GG666631.1: 1699499-1699583 [+]
• bfl-mir-4882c: GG666631.1: 1699784-1699878 [+]
• bfl-mir-4882a: GG666631.1: 1699928-1700001 [+]

Database links

• miRBase Tracker:MI0017651

Mature sequence bfl-miR-4882c

• Accession: MIMAT0020468
• Sequence: 60 - gcgagaaacccugcaagugag - 80
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).