Stem-loop sequence bfl-mir-4882b

Accession

MI0017650 (change log)

Description

Branchiostoma floridae miR-4882b stem-loop

Stem-loop

   gua    -  a    uc       -u   ac         uaa 
5'    aguc ug cuga  acacuug  agg  uucucccuu   g
      |||| || ||||  |||||||  |||  |||||||||   u
3'    ucgg ac gacu  uguggac  ucc  aagagggga   a
   aag    u  -    uc       uu   -a         cau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666631.1: 1699499-1699583 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-4882b

• bfl-mir-4884: GG666631.1: 1697024-1697098 [+]
• bfl-mir-4882b: GG666631.1: 1699499-1699583 [+]
• bfl-mir-4882c: GG666631.1: 1699784-1699878 [+]
• bfl-mir-4882a: GG666631.1: 1699928-1700001 [+]

Database links

• miRBase Tracker:MI0017650

Mature sequence bfl-miR-4882b

• Accession: MIMAT0020467
• Sequence: 51 - ggagaaaccuuucaggugucuu - 72
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).