Stem-loop sequence bfl-mir-4882a

Accession

MI0017649 (change log)

Description

Branchiostoma floridae miR-4882a stem-loop

Stem-loop

   u u    uc                uu    a  aaa 
5'  c cuga  acauuuguaggguuuu  ucac ug   g
    | ||||  ||||||||||||||||  |||| ||    
3'  g gauu  uguggacauuccaaag  agug ac   c
   u u    uc                --    g  aga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666631.1: 1699928-1700001 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-4882a

• bfl-mir-4884: GG666631.1: 1697024-1697098 [+]
• bfl-mir-4882b: GG666631.1: 1699499-1699583 [+]
• bfl-mir-4882c: GG666631.1: 1699784-1699878 [+]
• bfl-mir-4882a: GG666631.1: 1699928-1700001 [+]

Database links

• miRBase Tracker:MI0017649

Mature sequence bfl-miR-4882a

• Accession: MIMAT0020466
• Sequence: 47 - ugagaaaccuuacaggugucuu - 68
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).