miRBase entry: bfl-mir-34c-1

Stem-loop bfl-mir-34c-1


Accession
MI0017635
Description
Branchiostoma floridae bfl-mir-34c-1 precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

accucgugcagccaucuggcaguguuguuagcuggccgcuaggagucgcucuuuagGCCCUCUAUCAACGCUGCCCUAcggaagcgcgacac
...((((((..((....((((((((((.(((..((((...(((((...)))))..))))..))).))))))))))....))..))))))...

Structure
acc      ag  aucu          u   cu    gcu     u 
   ucgugc  cc    ggcaguguug uag  ggcc   aggag  
   ||||||  ||    |||||||||| |||  ||||   ||||| c
   agcgcg  gg    CCGUCGCAAC AUC  CCGg   uucuc  
cac      aa  cAUC          U   UC    -au     g 


Annotation confidence Not enough data
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Genome context
GG666685.1: 1088499-1088590 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bfl-mir-34c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-34c

Accession MIMAT0020451
Description Branchiostoma floridae bfl-miR-34c mature miRNA
Sequence 57 - GCCCUCUAUCAACGCUGCCCUA - 78
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27