miRBase entry: bfl-mir-4872c-2

Stem-loop bfl-mir-4872c-2


Accession
MI0017633
Description
Branchiostoma floridae bfl-mir-4872c-2 precursor miRNA
Gene family
MIPF0001205; mir-4872


Sequence

agagguucacaaguggUGUCAGGACGACAAAAGCUCUGAguucuguuaacaucagaguuuuguugccccgacuccuuuugugguca
......(((((((.((.(((.((.((((((((.(((((((((.....))).)))))))))))))).)).))).)).)))))))...

Structure
agaggu       u  U   A  A        G      -   c 
      ucacaag gg GUC GG CGACAAAA CUCUGA guu u
      ||||||| || ||| || |||||||| |||||| ||| g
      gguguuu cc cag cc guuguuuu gagacu caa u
---acu       u  u   c  c        -      a   u 


Annotation confidence Not enough data
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Genome context
GG666674.1: 876370-876455 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-4872c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-4872c

Accession MIMAT0020116
Description Branchiostoma floridae bfl-miR-4872c mature miRNA
Sequence 17 - UGUCAGGACGACAAAAGCUCUGA - 39
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27