Stem-loop sequence bfl-mir-4856b

Accession

MI0017617 (change log)

Description

Branchiostoma floridae miR-4856b stem-loop

Stem-loop

   gug      c    cuc      a   c   g    aaaacu 
5'    uucacc uugu   gcauug cgu agc ccgc      u
      |||||| ||||   |||||| ||| ||| ||||      u
3'    aagugg aaca   cgugac gca ucg ggcg      u
   cca      u    caa      c   c   a    gaaauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666534.1: 219709-219795 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-4856b

• bfl-mir-4869: GG666534.1: 216744-216826 [+]
• bfl-mir-4857: GG666534.1: 217921-217998 [+]
• bfl-mir-4862: GG666534.1: 218827-218894 [+]
• bfl-mir-4856b: GG666534.1: 219709-219795 [+]
• bfl-mir-4856a: GG666534.1: 220264-220351 [+]

Database links

• miRBase Tracker:MI0017617

Mature sequence bfl-miR-4856b-5p

• Accession: MIMAT0020093
• Previous IDs: bfl-miR-4856b
• Sequence: 16 - ucgcauugacgucagcgccgcaa - 38
• Evidence: experimental; 454 [1]

Mature sequence bfl-miR-4856b-3p

• Accession: MIMAT0020094
• Previous IDs: bfl-miR-4856b*
• Sequence: 53 - cggagcucacgccagugcaaca - 74
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).