Stem-loop sequence bfl-mir-4856a

Accession

MI0017609 (change log)

Description

Branchiostoma floridae miR-4856a stem-loop

Gene family

MIPF0001847; mir-4856

Stem-loop

   aga           -uacg           g       u  cau 
5'    gguaucuuuau     cagugacguca cgccucu gu   a
      |||||||||||     ||||||||||| ||||||| ||    
3'    ucguagaagua     gucacugcagu guggaga ca   c
   cca           cagua           a       -  cca 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666534.1: 220264-220351 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-4856a

• bfl-mir-4869: GG666534.1: 216744-216826 [+]
• bfl-mir-4857: GG666534.1: 217921-217998 [+]
• bfl-mir-4862: GG666534.1: 218827-218894 [+]
• bfl-mir-4856b: GG666534.1: 219709-219795 [+]
• bfl-mir-4856a: GG666534.1: 220264-220351 [+]

Database links

• miRBase Tracker:MI0017609

Mature sequence bfl-miR-4856a

• Accession: MIMAT0020082
• Sequence: 16 - acgcagugacgucagcgccucu - 37
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).