miRBase entry: bfl-mir-182b

Stem-loop bfl-mir-182b


Accession
MI0017608
Description
Branchiostoma floridae bfl-mir-182b precursor miRNA
Gene family
MIPF0000116; mir-182


Sequence

ggacuaguuuucuuggcacuugaggaauucucuguuugguugcauguaaugugcaucuuuaugguaucaCAGAAUUCCCCAGUACCAAGGAAacuggguu
...(((((((((((((.(((.(.((((((((((((..((.(((((.....))))).))..))))......))))))))).))).)))))))))))))...

Structure
gga             c   u a        ------    uu  u     g 
   cuaguuuucuugg acu g ggaauucu      cugu  gg ugcau u
   ||||||||||||| ||| | ||||||||      ||||  || ||||| a
   ggucaAAGGAACC UGA C CCUUAAGA      ggua  uc acgug a
uug             A   C -        Cacuau    uu  u     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GG666785.1: 120014-120113 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-182b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-182b-3p

Accession MIMAT0020081
Description Branchiostoma floridae bfl-miR-182b-3p mature miRNA
Sequence 70 - CAGAAUUCCCCAGUACCAAGGAA - 92
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27