miRBase entry: spu-mir-29b

Stem-loop spu-mir-29b


Accession
MI0017594
Description
Strongylocentrotus purpuratus spu-mir-29b precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

guaaucacaucuacuguuuucuauuggugcauagaguccuuguuuuacuucuucUAGCACCAUGAGAAAGCAGUAUuugugagac
....(((((..(((((((((((..((((((.(((((...............)))))))))))..)))))))))))..)))))...

Structure
guaa     uc           au      a     uccuug 
    ucaca  uacuguuuucu  uggugc uagag      u
    |||||  |||||||||||  |||||| |||||      u
    agugu  AUGACGAAAGA  ACCACG AUcuu      u
-cag     uU           GU      -     cuucau 


Annotation confidence Not enough data
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Genome context
KN913988.1: 527422-527506 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from spu-mir-29b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-29b

Accession MIMAT0020067
Description Strongylocentrotus purpuratus spu-miR-29b mature miRNA
Sequence 55 - UAGCACCAUGAGAAAGCAGUAU - 76
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27