miRBase entry: sko-mir-4843

Stem-loop sko-mir-4843


Accession
MI0017590
Description
Saccoglossus kowalevskii sko-mir-4843 precursor miRNA


Sequence

ggugggggugccgggaacaguaauuugacuuucucucugugaauuugagacagACAGAAAGUUGAUUUACUGCAUUucugucaccucucua
...(((((((.((((((((((((.((((((((((.(((((.........))))).)))))))))).))))))..)))))).)))))))...

Structure
ggu       c      --      u          c     gaa 
   gggggug cgggaa  caguaa uugacuuucu ucugu   u
   ||||||| ||||||  |||||| |||||||||| |||||   u
   ucuccac gucuUU  GUCAUU AGUUGAAAGA Agaca   u
auc       u      AC      U          C     gag 


Annotation confidence Not enough data
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Genome context
GL010949.1: 353783-353873 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sko-mir-4843
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4843

Accession MIMAT0020063
Description Saccoglossus kowalevskii sko-miR-4843 mature miRNA
Sequence 54 - ACAGAAAGUUGAUUUACUGCAUU - 76
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27