miRBase entry: sko-mir-4832

Stem-loop sko-mir-4832


Accession
MI0017576
Description
Saccoglossus kowalevskii sko-mir-4832 precursor miRNA


Sequence

ccaacaccaggcacgacaaguugaccuuuuacccuugaacauuucauggUCAGAAAGUCAACUUGCCGUUUGCcuguugugca
...(((.((((((((.(((((((((.(((((((..((((...)))).))).)))).))))))))).)))..))))).)))...

Structure
cca   c     --   a         c    -   cu    c 
   aca caggc  acg caaguugac uuuu acc  ugaa  
   ||| |||||  ||| ||||||||| |||| |||  |||| a
   ugu gucCG  UGC GUUCAACUG AAGA Ugg  acuu  
acg   u     UU   C         A    C   -u    u 


Annotation confidence Not enough data
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Genome context
GL010949.1: 354335-354417 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sko-mir-4832
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4832

Accession MIMAT0020046
Description Saccoglossus kowalevskii sko-miR-4832 mature miRNA
Sequence 50 - UCAGAAAGUCAACUUGCCGUUUGC - 73
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27