miRBase entry: sko-mir-4830a

Stem-loop sko-mir-4830a


Accession
MI0017572
Description
Saccoglossus kowalevskii sko-mir-4830a precursor miRNA


Sequence

gaccuggucuguuCUCUUGAGAGCCAUAUAGAGGGaugaguuaagaagccugcuauaugcucucgggauuccagaacacguc
(((.((.((((...((((((((((.(((((((((..(........)..))).))))))))))))))))...)))).)).)))

Structure
   c  g    uuC          C      -   Ga gag 
gac ug ucug   UCUUGAGAGC AUAUAG AGG  u   u
||| || ||||   |||||||||| |||||| |||  |    
cug ac agac   agggcucucg uauauc ucc  a   u
   c  a    cuu          -      g   ga gaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL014282.1: 4622-4703 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from sko-mir-4830a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4830a

Accession MIMAT0020041
Description Saccoglossus kowalevskii sko-miR-4830a mature miRNA
Sequence 14 - CUCUUGAGAGCCAUAUAGAGGG - 35
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27