Stem-loop sequence sko-mir-4818d

Accession

MI0017552 (change log)

Description

Saccoglossus kowalevskii miR-4818d stem-loop

Gene family

MIPF0001211; mir-4818

Stem-loop

   ----g   cacu        uguau    u         a   c    -   ag 
5'      cag    guguugag     ccuc cuauugagu caa ugug gau  a
        |||    ||||||||     |||| ||||||||| ||| |||| |||  u
3'      guc    cacgacuu     gggg gauaacuca guu acgc cua  c
   cuaua   ----        uccuc    u         c   -    u   ca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Skow_1.1; GCA_000003605.1): GL015416.1: 64657-64757 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sko-mir-4818d

• sko-mir-4818c: GL015416.1: 65470-65568 [-]
• sko-mir-4818a: GL015416.1: 65099-65176 [-]
• sko-mir-4818d: GL015416.1: 64657-64757 [-]
• sko-mir-4818g: GL015416.1: 64531-64631 [-]
• sko-mir-4818b: GL015416.1: 64345-64436 [-]
• sko-mir-4818e: GL015416.1: 63398-63498 [-]
• sko-mir-4818f: GL015416.1: 63295-63397 [-]

Database links

• EntrezGene:Mir4818d
• miRBase Tracker:MI0017552

Mature sequence sko-miR-4818d

• Accession: MIMAT0020013
• Sequence: 61 - cauugcacucaauaguggggc - 81
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).