miRBase entry: sko-mir-4818b

Stem-loop sko-mir-4818b


Accession
MI0017550
Description
Saccoglossus kowalevskii sko-mir-4818b precursor miRNA


Sequence

uguuaauacauaugcagCCUCACUCUCAAGUGCAAGAGGauugaucacugaugucCAUUGCACUUAAUAGUGGGGCuuuguguguauuauug
...(((((((((((.(((((((((...((((((((..((((...........)))).))))))))...))))))))).)))))))))))...

Structure
ugu           c         CUC        GA    ugau 
   uaauacauaug agCCUCACU   AAGUGCAA  GGau    c
   ||||||||||| |||||||||   ||||||||  ||||    a
   auuaugugugu uCGGGGUGA   UUCACGUU  Ccug    c
guu           u         UAA        -A    uagu 


Annotation confidence Not enough data
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Genome context
GL015416.1: 64345-64436 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from sko-mir-4818b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-4818b-5p

Accession MIMAT0020010
Description Saccoglossus kowalevskii sko-miR-4818b-5p mature miRNA
Sequence 18 - CCUCACUCUCAAGUGCAAGAGG - 39
Evidence experimental
454 [1]

Mature sko-miR-4818b-3p

Accession MIMAT0020011
Description Saccoglossus kowalevskii sko-miR-4818b-3p mature miRNA
Sequence 56 - CAUUGCACUUAAUAGUGGGGC - 76
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27