Stem-loop sequence sko-mir-4817

Accession

MI0017548 (change log)

Description

Saccoglossus kowalevskii miR-4817 stem-loop

Stem-loop

   gaugauaa     uuc      u   a    g       --        auu 
5'         uguuc   uguuuu ggg uuuc cuggcca  guaugagg   g
           |||||   |||||| ||| |||| |||||||  ||||||||    
3'         acaag   acaaaa ccc aaag gaccggu  cauacuuu   u
   ---uuucg     uau      c   c    a       gu        gca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Skow_1.1; GCA_000003605.1): GL012752.1: 7978-8078 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sko-mir-4817

• sko-mir-365: GL012752.1: 8972-9058 [+]
• sko-mir-193b: GL012752.1: 7988-8065 [+]
• sko-mir-4817: GL012752.1: 7978-8078 [-]
• sko-mir-193a: GL012752.1: 7651-7719 [+]

Database links

• EntrezGene:Mir4817
• miRBase Tracker:MI0017548

Mature sequence sko-miR-4817-5p

• Accession: MIMAT0020008
• Previous IDs: sko-miR-4817*
• Sequence: 22 - uugggauuucgcuggccaguau - 43
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).