miRBase entry: cel-mir-4809

Stem-loop cel-mir-4809


Accession
MI0017539
Description
Caenorhabditis elegans cel-mir-4809 precursor miRNA


Sequence

15 reads, 1 reads per million, 8 experiments
GUAAGUUCAGAGUUGAAUUAUCuugaucauauuugaUAAUACAACUUCUGGGCUUCCAG
(.(((((((((((((.((((((............)))))).)))).))))))))).)..

Structure
-- U         -    A      uugau 
  G AAGUUCAGA GUUG AUUAUC     c
  | ||||||||| |||| ||||||      
  C UUCGGGUCU CAAC UAAUag     a
GA C         U    A      uuuau 


Annotation confidence Not enough data
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Genome context
chrX: 1873646-1873704 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from cel-mir-4809
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-4809-5p

Accession MIMAT0019993
Description Caenorhabditis elegans cel-miR-4809-5p mature miRNA
Sequence 1 - GUAAGUUCAGAGUUGAAUUAUC - 22
Evidence experimental
Illumina [1-2]

Mature cel-miR-4809-3p

Accession MIMAT0019994
Description Caenorhabditis elegans cel-miR-4809-3p mature miRNA
Sequence 37 - UAAUACAACUUCUGGGCUUCCAG - 59
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21085120
    Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs
    "Jan CH, Friedman RC, Ruby JG, Bartel DP"
    "Nature (2011) 469:97-101

  2. PubMed ID: 21177960
    Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
    "Chung WJ, Agius P, Westholm JO, Chen M, Okamura K, Robine N, Leslie CS, Lai EC"
    "Genome Res (2011) 21:286-300