miRBase entry: tcc-MIR398b

Stem-loop tcc-MIR398b


Accession
MI0017518
Description
Theobroma cacao tcc-MIR398b precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
1 open access papers mention tcc-MIR398b
(1 sentences)

Sequence

cagccagaugguuuaccacgaaggggugccaccuaagaacccaggcgguuuggccugagcuaggccuuugccaagcugcuaugaaaaggaaggcugaaugcuaaugcagccagcagcaaccgguUGUGUUCUCAGGUCACCCCUUcgcgguacuucuaucuucgc
..((.((((((..((((.((((((((((..((((.(((((.(((.(((((.((((((...))))))........((((((...........(((((.((....)).)))))))))))))))).))).))))).)))))))))))))).))))...))))))..))

Structure
ca  -c      -uu    a          cc    a     c   g     uggccugagcuaggccuuugccaa      augaaaaggaa     a  g 
  gc  agaugg   uacc cgaaggggug  accu agaac cag cgguu                        gcugcu           ggcug au c
  ||  ||||||   |||| ||||||||||  |||| ||||| ||| |||||                        ||||||           ||||| ||  
  cg  ucuauc   augg gcUUCCCCAC  UGGA UCUUG GUu gccaa                        cgacga           ccgac ua u
--  cu      uuc    c          --    C     U   g     ------------------------      -----------     g  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR398b

Accession MIMAT0020434
Description Theobroma cacao tcc-miR398b mature miRNA
Sequence 125 - UGUGUUCUCAGGUCACCCCUU - 145
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108