Stem-loop tcc-MIR397

Accession

MI0017516

Description

Theobroma cacao tcc-MIR397 precursor miRNA

Gene family

MIPF0000120; MIR397

Sequence

auucccagauggaagacacaUCAUUGAGUGCAGCGUUGAUGaauucuuucacuuuuugccaacucuaucucagaugaauucgccagcgcugcacucaaucauguguuuugcucuuucuggaaa
....(((((.(((((((((((.((((((((((((((((.(((((((.............................))))))).)))))))))))))))).))))))))...))).)))))...

Structure

auuc     u   ---        C                A       uuucacuuuuugc 
    ccaga gga   agacacaU AUUGAGUGCAGCGUUG UGaauuc             c
    ||||| |||   |||||||| |||||||||||||||| |||||||             a
    ggucu ucu   uuugugua uaacucacgucgcgac gcuuaag             a
-aaa     u   cgu        c                c       uagacucuaucuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR397

• Accession: MIMAT0020432
• Description: Theobroma cacao tcc-miR397 mature miRNA
• Sequence: 21 - UCAUUGAGUGCAGCGUUGAUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108