miRBase entry: tcc-MIR396e

Stem-loop tcc-MIR396e


Accession
MI0017515
Description
Theobroma cacao tcc-MIR396e precursor miRNA
Gene family
MIPF0000047; MIR396


Sequence

aguccucguuugccauguuaUUCCACAGCUUUCUUGAACUUcuaugcuagcuauagcugcaccaaaagcggcuagcaaaauuaugaagaaaaaauugaaagagaaguucaagaaagccguggaaaagcaugacaggacuuuuuaca
((((((.((....((((((.((((((.((((((((((((((((.((((((((...(((........)))))))))))........................)))))))))))))))).)))))).)))))))))))))).......

Structure
-------      c  uugc      a      A                -----------------------a        aua   gca 
       aguccu gu    cauguu UUCCAC GCUUUCUUGAACUUcu                        ugcuagcu   gcu   c
       |||||| ||    |||||| |||||| ||||||||||||||||                        ||||||||   |||    
       ucagga ca    guacga aaggug cgaaagaacuugaaga                        acgaucgg   cga   c
acauuuu      -  ----      a      c                gaaaguuaaaaaagaaguauuaaa        ---   aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR396e

Accession MIMAT0020431
Description Theobroma cacao tcc-miR396e mature miRNA
Sequence 21 - UUCCACAGCUUUCUUGAACUU - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108