Stem-loop tcc-MIR396d

Accession

MI0017514

Description

Theobroma cacao tcc-MIR396d precursor miRNA

Gene family

MIPF0000047; MIR396

Sequence

aauggguucguuacaugcuuUUCCACGGCUUUCUUGAACUUgguacucugacuugucuucucuccucguucuuucuccaaugauuugauuugauaaaauguguuggugguaaaaaagaggacaucaaauucuuaguaugaagcucaagaaagccgugggaaaacaugaacggauuuuguuuu
...(((((((((.((((.(((((((((((((((((((.(((.(((((..((.(((.......(((((......((.(((((.((((.........))))..))))).)).......)))))...)))..))..))))).))).))))))))))))))))))).)))))))))))))......

Structure

---aau         a    c                   A   g     cu  -c   ucuucuc     -guucuu  u     -g    gau 
      ggguucguu caug uuUUCCACGGCUUUCUUGA CUU guacu  ga  uug       uccuc       uc ccaau  auuu   u
      ||||||||| |||| ||||||||||||||||||| ||| |||||  ||  |||       |||||       || |||||  ||||   u
      uuuaggcaa guac aaagggugccgaaagaacu gaa uauga  cu  aac       aggag       gg gguug  uaaa   g
uuuugu         -    a                   c   g     uu  ua   ----uac     aaaaaau  u     ug    aua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR396d

• Accession: MIMAT0020430
• Description: Theobroma cacao tcc-miR396d mature miRNA
• Sequence: 21 - UUCCACGGCUUUCUUGAACUU - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108