Stem-loop tcc-MIR396c

Accession

MI0017513

Description

Theobroma cacao tcc-MIR396c precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention tcc-MIR396c
(2 sentences)

Sequence

uugaagucuuggccaugcuuUUCCACAGCUUUCUUGAACUUucuuugugaacgacucgaucucaaaaauauuagcuuaugcuagauaauagcuauauagcacaccgaggaagcucaagaaagcugugggaaaacauggcaauucaggacuuu
..(((((((((((((((.(((((((((((((((((((.(((((((.(((......................((((....)))).......(((....))).))).))))))).))))))))))))))))))).))))))....)))))))))

Structure

uu         ----      c                   A       u   aacgacucgaucucaaaaauau    u 
  gaagucuug    gccaug uuUUCCACAGCUUUCUUGA CUUucuu gug                      uagc u
  |||||||||    |||||| ||||||||||||||||||| ||||||| |||                      ||||  
  uuucaggac    cgguac aaagggugucgaaagaacu gaaggag cac                      aucg a
--         uuaa      a                   c       c   ----acgauauaucgauaauag    u 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR396c

• Accession: MIMAT0020429
• Description: Theobroma cacao tcc-miR396c mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUU - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108