miRBase entry: tcc-MIR171h

Stem-loop tcc-MIR171h


Accession
MI0017496
Description
Theobroma cacao tcc-MIR171h precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

cuacaugaaauaguaacugugauauuggccugguucacucagacauucaaugacagcacuuucugaagaguaaagcauuuugcugguuuuggucUGAUUGAGCCGUGCCAAUAUCuuagaacucuuucauaucuc
....((((((.(((..(((.(((((((((.(((((((.((((((...(((...(((((((((((....)).)))).....)))))...))))))))).))))))).))))))))).))).))).)))))).....

Structure
-cuac      u   aa   u         c       c      auu   uga     -----    -  g 
     augaaa agu  cug gauauuggc ugguuca ucagac   caa   cagca     cuuu cu a
     |||||| |||  ||| ||||||||| ||||||| ||||||   |||   |||||     |||| ||  
     uacuuu uca  gau CUAUAACCG GCCGAGU AGUcug   guu   gucgu     gaaa ga a
cucua      c   -a   u         U       U      ---   uug     uuuac    u  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR171h

Accession MIMAT0020412
Description Theobroma cacao tcc-miR171h mature miRNA
Sequence 95 - UGAUUGAGCCGUGCCAAUAUC - 115
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108