miRBase entry: tcc-MIR171e

Stem-loop tcc-MIR171e


Accession
MI0017493
Description
Theobroma cacao tcc-MIR171e precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

uugguugcaauagucacuacgauguuggcucgguucacucagacaaaaucaacccuacgcuucucaagcacacacacacaaaaaaaagagcuuuagauuuugcguaucuuccauguguuuUGAUUGAGCCGUGCCAAUAUCcuagugccuuuucaauucac
..(((((.((.((.(((((.(((((((((.(((((((.(((((((..........(((((.(((.((((....................)))).)))....))))).........)).))))).))))))).))))))))).))))).)).)))))))...

Structure
-uu     c  u  u     c         u       c     -  aaaucaaccc     ---u   c    acacacaca 
   gguug aa ag cacua gauguuggc cgguuca ucaga ca          uacgc    ucu aagc         c
   ||||| || || ||||| ||||||||| ||||||| ||||| ||          |||||    ||| ||||          
   uuaac uu uc gugau CUAUAACCG GCCGAGU AGUuu gu          augcg    aga uucg         a
cac     -  u  c     c         U       U     u  -guaccuucu     uuuu   u    agaaaaaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR171e

Accession MIMAT0020409
Description Theobroma cacao tcc-miR171e mature miRNA
Sequence 121 - UGAUUGAGCCGUGCCAAUAUC - 141
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108