Stem-loop tcc-MIR171b

Accession

MI0017490

Description

Theobroma cacao tcc-MIR171b precursor miRNA

Gene family

MIPF0000030; MIR171_1

Sequence

auuuggauuaagaugaaggcgauguuggugagguucaaucugaagaugggcguaugcgagaagcauaggaauucauuucAGAUUGAGCCGCGCCAAUAUCacuuucuuuacaauggguuu
..............(((((.((((((((((.((((((((((((.(((((((.(((((.....))))).)..)))))))))))))))))).)))))))))).)))))..............

Structure

auuuggauuaagau     c          a            a      -- g     g 
              gaagg gauguuggug gguucaaucuga gauggg  c uaugc a
              ||||| |||||||||| |||||||||||| ||||||  | ||||| g
              cuuuc CUAUAACCGC CCGAGUUAGAcu uuacuu  g auacg a
uuuggguaacauuu     a          G            -      aa g     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR171b

• Accession: MIMAT0020406
• Description: Theobroma cacao tcc-miR171b mature miRNA
• Sequence: 80 - AGAUUGAGCCGCGCCAAUAUC - 100
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108