miRBase entry: tcc-MIR169n

Stem-loop tcc-MIR169n


Accession
MI0017488
Description
Theobroma cacao tcc-MIR169n precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

aaagggagggagugggggcuUGAGUCAAGAAUGACUUGCCGguguuugcuucuuggcaggcauuaauuaagccggcucaccggccuuaaccuaguccuccggcaaguuguucuuggcucaccuucgcucucuuuucuuucau
((((((((((((((((((..((((((((((((((((((((((((((((((....))))))))....(((((((((....)))).))))).........))))))))))))))))))))))))))))))).)))))))))...

Structure
---         -         cu                      uguuugcuucuuggcaggcauuaa     -    c 
   aaagggagg gaguggggg  UGAGUCAAGAAUGACUUGCCGg                        uuaag ccgg u
   ||||||||| |||||||||  ||||||||||||||||||||||                        ||||| ||||  
   uuucuuuuc cucgcuucc  acucgguucuuguugaacggcc                        aauuc ggcc c
uac         u         --                      ---------------uccugaucc     c    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR169n

Accession MIMAT0020404
Description Theobroma cacao tcc-miR169n mature miRNA
Sequence 21 - UGAGUCAAGAAUGACUUGCCG - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108