Stem-loop tcc-MIR169m

Accession

MI0017487

Description

Theobroma cacao tcc-MIR169m precursor miRNA

Gene family

MIPF0000037; MIR169_2

Sequence

aagaaagggacaguggaguuUGAGCCAAGGAUGACUUGCCGggauauuugcugcggagcaguauaugccucaacugucuuccgaaaagucauuuuuggcucaccuucgcucucauguuuuccau
..(((((.((.(((((((..(((((((((((((((((..((((((((.((((((...)))))).)))...........)))))..))))))))))))))))).))))))).))...)))))...

Structure

-aa     --g  c       uu                 GC     -----------   u      g 
   gaaag   ga aguggag  UGAGCCAAGGAUGACUU  CGgga           uau ugcugc  
   |||||   || |||||||  |||||||||||||||||  |||||           ||| |||||| g
   cuuuu   cu ucgcuuc  acucgguuuuuacugaa  gccuu           gua augacg  
uac     gua  c       -c                 aa     cugucaacucc   u      a 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169m

• Accession: MIMAT0020403
• Description: Theobroma cacao tcc-miR169m mature miRNA
• Sequence: 21 - UGAGCCAAGGAUGACUUGCCG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108