miRBase entry: tcc-MIR169l

Stem-loop tcc-MIR169l


Accession
MI0017486
Description
Theobroma cacao tcc-MIR169l precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

gagagguagagaauuuagugCAGCCAAGGAUGACUUGCCGGcguagacaauacucaaauacuaauuauuauuguauuuuuccggcaagucuguccuuggcuacauugguuucucuucuucuc
((((((.((((((.((((((.((((((((((((((((((((.....((((((................))))))......)))))))))).)))))))))).)))))).)))))).))))))

Structure
      u      u      C          -          -cguag      cucaaau 
gagagg agagaa uuagug AGCCAAGGAU GACUUGCCGG      acaaua       a
|||||| |||||| |||||| |||||||||| ||||||||||      ||||||        
cucuuc ucucuu gguuac ucgguuccug cugaacggcc      uguuau       c
      u      u      a          u          uuuuua      uauuaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR169l

Accession MIMAT0020402
Description Theobroma cacao tcc-miR169l mature miRNA
Sequence 21 - CAGCCAAGGAUGACUUGCCGG - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108