Stem-loop tcc-MIR169j

Accession

MI0017484

Description

Theobroma cacao tcc-MIR169j precursor miRNA

Gene family

MIPF0000012; MIR169_1

Sequence

agauaaagagucuuguuugaUAGCCAAGGAUGACUUGCCUGuaccucacagcagguuucucuuagguuaaaaguucuuccuuggaagccccugucuaguuucaggcaauuauccuuggcuaaccugacaggcucuucucua
(((..((((((((.(((.(.(((((((((((((.(((((((.((...((((..(((((((...(((............))).))))))).))))...))..)))))))))))))))))))).)..))))))))))).))).

Structure

-   ua        u   -u a             C       -u  cuc    ca       cuu   uuaaa 
 aga  aagagucu guu  g UAGCCAAGGAUGA UUGCCUG  ac   acag  gguuucu   agg     a
 |||  |||||||| |||  | ||||||||||||| |||||||  ||   ||||  |||||||   |||      
 ucu  uucucgga cag  c aucgguuccuauu aacggac  ug   uguc  ccgaagg   ucc     g
a   -c        -   uc a             -       uu  auc    -c       --u   uucuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169j

• Accession: MIMAT0020400
• Description: Theobroma cacao tcc-miR169j mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108