Stem-loop tcc-MIR169h

Accession

MI0017482

Description

Theobroma cacao tcc-MIR169h precursor miRNA

Gene family

MIPF0000012; MIR169_1

Sequence

agguaaagagucaugcuuggUAGCCAAGGAUGACUUGCCUGcaccuuuccccaaggauucaaguaaauggcuaagaaaccugaaacuccuuucagguugccaggcagucaccuaggcuaaucuagcagguucuuuuccc
.((.((((((((.((((.(((((((.(((.(((((.((((((.((((.....)))).....(((.....)))....(((((((((....)))))))))).))))))))))))).)))).))).)))))))))))).)).

Structure

a  u        a    u   -    A   A     U     - accuuuccccaaggauucaaguaaauggcuaaga         c 
 gg aaagaguc ugcu ggU AGCC AGG UGACU GCCUG c                                  aaccugaaa u
 || |||||||| |||| ||| |||| ||| ||||| ||||| |                                  |||||||||  
 cc uuucuugg acga cua ucgg ucc acuga cggac g                                  uuggacuuu c
c  u        -    u   a    a   -     -     c ----------------------------------         c 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169h

• Accession: MIMAT0020398
• Description: Theobroma cacao tcc-miR169h mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108