Stem-loop tcc-MIR169f

Accession

MI0017480

Description

Theobroma cacao tcc-MIR169f precursor miRNA

Gene family

MIPF0000012; MIR169_1

Sequence

aagaagagagccucgcuggaAAGCCAAGAAUGACUUGCCUGcuuccuccuugagguuucaaaauuucaaugaaacuuuuaaaacccgccauucuggcucgcgggcagucuucuucgcuuucuugacaggcuauucuuuucc
.((((((((((((..(.(((((((.(((((.((((.((((((.........(((((((((.........)))))))))........((((...))))..))))))))))))))).))))))).)..))))).)))))))..

Structure

-a       -     cg u       C     U    U      ------------uuccuccuu         aaa 
  agaagag agccu  c ggaAAGC AAGAA GACU GCCUGc                     gagguuuca   u
  ||||||| |||||  | ||||||| ||||| |||| ||||||                     |||||||||   u
  uuuucuu ucgga  g ucuuucg uucuu cuga cgggcg                     uuucaaagu   u
cc       a     ca u       c     -    -      cucggucuuaccgcccaaaau         aac 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169f

• Accession: MIMAT0020396
• Description: Theobroma cacao tcc-miR169f mature miRNA
• Sequence: 21 - AAGCCAAGAAUGACUUGCCUG - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108