miRBase entry: tcc-MIR169d

Stem-loop tcc-MIR169d


Accession
MI0017478
Description
Theobroma cacao tcc-MIR169d precursor miRNA
Gene family
MIPF0000012; MIR169_1


Sequence

agauuaagagucuuguugggUAGCCAAGGAUGACUUGCCUAuauccaaaaaggauuuugaggaaagaaaagcugaaucugauaaaucucaucagaguccuuuuaaugguuucugggcagucuccuuuggcuauccugacuggcucuuaucuu
((((.(((((((..(((((((((((((((..((((.(((((...(((((((((((((((((((......((......))......)))..)))))))))))))..)))....)))))))))..)))))))))))).))).))))))))))).

Structure
-    u       uu   -            AU    U     -uau   --             --   aagaaa  cu 
 agau aagaguc  guu gggUAGCCAAGG  GACU GCCUA    cca  aaaaggauuuuga  gga      ag  g
 |||| |||||||  ||| ||||||||||||  |||| |||||    |||  |||||||||||||  |||      ||   
 ucua uucucgg  cag ccuaucgguuuc  cuga cgggu    ggu  uuuuccugagacu  ucu      uc  a
u    -       -u   u            cu    -     cuuu   aa             ac   aaauag  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR169d

Accession MIMAT0020394
Description Theobroma cacao tcc-miR169d mature miRNA
Sequence 21 - UAGCCAAGGAUGACUUGCCUA - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108