Stem-loop tcc-MIR169c

Accession

MI0017477

Description

Theobroma cacao tcc-MIR169c precursor miRNA

Gene family

MIPF0000037; MIR169_2

Sequence

uaggccuagaaaggauggugCAGCCAAGGAUGACUUGCCGAcuacucccuccagccuuugcuguacuguuuuuuauauugaaaaaauggauauagaugaagugggcaagucgucuuuggcuacauuuuucuuucuccuccuc
.(((...((((((((.((((.((((((((((((((((((.(((.(((....((((....))))..(((((((((......))))))))).....)).).))).)))))))))))))))))).)))).))))))))...))).

Structure

u   ccu        u    C                  G   a -  ccuccagccuuugcugua         au 
 agg   agaaagga ggug AGCCAAGGAUGACUUGCC Acu c uc                  cuguuuuuu  a
 |||   |||||||| |||| |||||||||||||||||| ||| | ||                  |||||||||   
 ucc   ucuuucuu uuac ucgguuucugcugaacgg uga g ag                  gguaaaaaa  u
c   ucc        u    a                  g   a u  -------------auaua         gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR169c

• Accession: MIMAT0020393
• Description: Theobroma cacao tcc-miR169c mature miRNA
• Sequence: 21 - CAGCCAAGGAUGACUUGCCGA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108