miRBase entry: tcc-MIR169b

Stem-loop tcc-MIR169b


Accession
MI0017476
Description
Theobroma cacao tcc-MIR169b precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

ggaaaugaggcuaugugcugCAGCCAAGGAUGACUUGCCGGaaaagcuauauuuuacauuauauuacccuguucccugauauuaacuauaugcuucuguaucaauuuuaacuauaaauuaauaaaauuuauaauaaauguuauaagaguuuaucggcaagucgucucuggcuauaucacuguuucauuuucuc
(((((((((((...(((.((.(((((.((((((((((((((..(((((.......(((((................((((((...............))))))........((((((((.....))))))))...)))))......))))).)))))))))))))).))))).)).))).)))))))))))..

Structure
--           uau   c  C     A              aa     auauuuu     auauuacccuguucccugauauuaacuauaugcuucuguaucaauuuuaac        a 
  ggaaaugaggc   gug ug AGCCA GGAUGACUUGCCGG  aagcu       acauu                                                   uauaaauu a
  |||||||||||   ||| || ||||| ||||||||||||||  |||||       |||||                                                   |||||||| u
  cuuuuacuuug   cac au ucggu ucugcugaacggcu  uuuga       uguaa                                                   auauuuaa a
cu           --u   u  a     c              -a     -gaauau     ------------------------------------------------aua        a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tcc-miR169b

Accession MIMAT0020392
Description Theobroma cacao tcc-miR169b mature miRNA
Sequence 21 - CAGCCAAGGAUGACUUGCCGG - 41
Evidence not_experimental

References

  1. PubMed ID: 21186351
    The genome of Theobroma cacao
    "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
    "Nat Genet (2011) 43:101-108