Stem-loop tcc-MIR167b

Accession

MI0017472

Description

Theobroma cacao tcc-MIR167b precursor miRNA

Gene family

MIPF0000023; MIR167_1

Sequence

gaauucugcaguggaaaaagUGAAGCUGCCAGCAUGAUCUAucuuugguuagugagugaaagggggugcuaaggcuauguugcuaacccuagcuaggucaugcucugacagccucacuccuuccuacuuggggaccca
....(((.((((((((..(((((.(((((.(((((((((((.((..(((((((((((...((......))...)))....))))))))..)).)))))))))))..).)))).)))))..)))).)).)).)))....

Structure

gaau   g  -  -    aa     A    - -C           u  uu        ----   gaa  gg 
    ucu ca gu ggaa  agUGA GCUG C  AGCAUGAUCUA cu  gguuagug    agu   ag  g
    ||| || || ||||  ||||| |||| |  ||||||||||| ||  ||||||||    |||   ||   
    agg gu ca ccuu  ucacu cgac g  ucguacuggau ga  ccaaucgu    ucg   uc  g
accc   g  u  u    cc     c    a uc           c  uc        ugua   gaa  gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature tcc-miR167b

• Accession: MIMAT0020388
• Description: Theobroma cacao tcc-miR167b mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUA - 41
• Evidence: not_experimental

References

1. PubMed ID: 21186351
   The genome of Theobroma cacao
   "Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal"
   "Nat Genet (2011) 43:101-108