Stem-loop sequence hsa-mir-4728

Accession

MI0017365 (change log)

Symbol

HGNC:MIR4728

Description

Homo sapiens miR-4728 stem-loop

Literature search

13 open access papers mention hsa-mir-4728
(147 sentences)

Stem-loop

   -- u   -     a    -     a  ---aca     
5'   g ggg agggg gagg cagca gc      cagg 
     | ||| ||||| |||| ||||| ||      ||| g
3'   c ccc uccuc cucc gucgu cg      gucc 
   ga -   g     c    a     a  aucagg     

Deep sequencing

141 reads, 0 reads per million, 69 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr17: 39726495-39726561 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000257707 ; KRT9-001; intron 1

  OTTHUMT00000448598 ; KRT9-002; intron 2

  ENST00000246662 ; KRT9-001; intron 1

  ENST00000588431 ; KRT9-002; intron 2

Database links

• EntrezGene:MIR4728
• HGNC:MIR4728
• miRBase Tracker:MI0017365

Mature sequence hsa-miR-4728-5p

• Accession: MIMAT0019849
• Sequence: 2 - ugggaggggagaggcagcaagca - 24
• Deep sequencing: 42 reads, 27 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4728-5p
  • TargetScanVert:hsa-miR-4728-5p
  • miRDB:hsa-miR-4728-5p

Mature sequence hsa-miR-4728-3p

• Accession: MIMAT0019850
• Sequence: 43 - caugcugaccucccuccugccccag - 67
• Deep sequencing: 98 reads, 61 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4728-3p
  • TargetScanVert:hsa-miR-4728-3p
  • miRDB:hsa-miR-4728-3p

References

1. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).