Stem-loop sequence osa-MIR812k

Accession

MI0017245 (change log)

Description

Oryza sativa miR812k stem-loop

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812k
(16 sentences)

Stem-loop

             u        c       ag        cu             c         u          uauaauuagcauuuuuguuguuaugagaugauaaaacau 
5' cuccguuuca aauaagug agccaug  uuuccgcg  caauuuugaucgu cgucuuauu gaaauuuuuu                                       g
   |||||||||| |||||||| |||||||  ||||||||  ||||||||||||| ||||||||| ||||||||||                                        
3' gaggcagagu uuauucac ucgguac  aaaggcgc  guugaaauuggca gcagaauaa uuuuaaaaaa                                       a
             u        a       ca        ag             a         u          cuuuuuuaaauuuuuguauucaguguucauuucaugaua 

Deep sequencing

9178 reads, 3.7e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0017245

Mature sequence osa-miR812k

• Accession: MIMAT0019666
• Sequence: 171 - acgaacgguuaaaguuggacgcgg - 194
• Deep sequencing: 7878 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001BABA3_39947

References

1. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).