miRBase entry: pma-mir-4547

Stem-loop pma-mir-4547


Accession
MI0017157
Description
Petromyzon marinus pma-mir-4547 precursor miRNA


Sequence

augugggcgaguugcgcUGUUUUCUGACAAAGGGUUGGCuugugaacugugucuuccGGCCCAUUGCUAGGAAACAUUGccacuagcccaagc
...(((((.(((.(((.(((((((((.(((.(((((((.....((......))..))))))).))).))))))))).))).))).)))))...

Structure
aug     g   u   c         A   A       Cuugu  ac 
   ugggc agu gcg UGUUUUCUG CAA GGGUUGG     ga  u
   ||||| ||| ||| ||||||||| ||| |||||||     ||   
   acccg uca cGU ACAAAGGAU GUU CCCGGcc     cu  g
cga     a   c   U         C   A       ---uu  gu 


Annotation confidence Not enough data
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Genome context
GL490208.1: 4315-4407 [-]

Database links

Mature pma-miR-4547-5p

Accession MIMAT0019578
Description Petromyzon marinus pma-miR-4547-5p mature miRNA
Sequence 18 - UGUUUUCUGACAAAGGGUUGGC - 39
Evidence experimental
454 [1]

Mature pma-miR-4547-3p

Accession MIMAT0019579
Description Petromyzon marinus pma-miR-4547-3p mature miRNA
Sequence 58 - GGCCCAUUGCUAGGAAACAUUG - 79
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383