miRBase entry: pma-mir-1788b

Stem-loop pma-mir-1788b


Accession
MI0017143
Description
Petromyzon marinus pma-mir-1788b precursor miRNA
Gene family
MIPF0000792; mir-1788


Sequence

cuucccaucuccgccucaggcuugcuucagcugccugugugucaucgcugcgagccaCAGGCAAGGUAAAACAAGCCCGAggcaggugggugg
((.(((((((..(((((.((((((.((.(.(((((((((..((........))..))))))).)).).)).)))))).)))))))))))).))

Structure
  u       cc     a      c  c g  -       ug  auc 
cu cccaucu  gccuc ggcuug uu a cu gccugug  uc   g
|| |||||||  ||||| |||||| || | || |||||||  ||    
gg gggugga  cggAG CCGAAC AA U GA CGGACac  ag   c
  u       --     C      A  A G  A       cg  cgu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL484476.1: 286098-286190 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pma-mir-1788b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-1788b-3p

Accession MIMAT0019563
Description Petromyzon marinus pma-miR-1788b-3p mature miRNA
Sequence 58 - CAGGCAAGGUAAAACAAGCCCGA - 80
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383