miRBase entry: pma-mir-218a-1

Stem-loop pma-mir-218a-1


Accession
MI0017115
Description
Petromyzon marinus pma-mir-218a-1 precursor miRNA
Gene family
MIPF0000026; mir-218


Sequence

gccgucccugccUUGUGCUUGAUCUAACCAUGUGcugccccaaacaacAUGGUUUGUUCAUGCACCAGGUagaggcaug
...(((.((((((.((((.(((.(.((((((((.............)))))))).).))).)))).)))))).)))...

Structure
gcc   c      U    U   U U        Gcugc 
   guc cugccU GUGC UGA C AACCAUGU     c
   ||| |||||| |||| ||| | ||||||||     c
   cgg gaUGGA CACG ACU G UUGGUAca     c
gua   a      C    U   U U        acaaa 


Annotation confidence Not enough data
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Genome context
GL476529.1: 128989-129067 [+]

Database links

Mature pma-miR-218a-3p

Accession MIMAT0019530
Description Petromyzon marinus pma-miR-218a-3p mature miRNA
Sequence 49 - AUGGUUUGUUCAUGCACCAGGU - 70
Evidence experimental
454 [1]

Mature pma-miR-218a-5p

Accession MIMAT0019529
Description Petromyzon marinus pma-miR-218a-5p mature miRNA
Sequence 13 - UUGUGCUUGAUCUAACCAUGUG - 34
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383