miRBase entry: pma-mir-216a

Stem-loop pma-mir-216a


Accession
MI0017112
Description
Petromyzon marinus pma-mir-216a precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

ugaucucggccCAAUCUCAGCUGGCAACUGUGAGugcuguguugggaauugcccACGGGAGUCACUGGGAUUAGGCugugagca
((.((.(((((.((((((((.((((..(((((.(.((.((.......)).))))))))..)))))))))))).))))).)).))

Structure
  a  u     C        C    AA     A u  u  gu 
ug uc cggcc AAUCUCAG UGGC  CUGUG G gc gu  u
|| || ||||| |||||||| ||||  ||||| | || ||  g
ac ag guCGG UUAGGGUC ACUG  GGCAc c cg ua  g
  g  u     A        -    AG     - -  u  ag 


Annotation confidence Not enough data
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Genome context
GL476438.1: 661741-661824 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pma-mir-216a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-216a-5p

Accession MIMAT0019525
Description Petromyzon marinus pma-miR-216a-5p mature miRNA
Sequence 12 - CAAUCUCAGCUGGCAACUGUGAG - 34
Evidence experimental
454 [1]

Mature pma-miR-216a-3p

Accession MIMAT0019526
Description Petromyzon marinus pma-miR-216a-3p mature miRNA
Sequence 55 - ACGGGAGUCACUGGGAUUAGGC - 76
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383