miRBase entry: pma-mir-199a

Stem-loop pma-mir-199a


Accession
MI0017101
Description
Petromyzon marinus pma-mir-199a precursor miRNA
Gene family
MIPF0000040; mir-199


Sequence

guuccgucucCCCAGUGUUCAGACUACCUGUUCaggagguuaauguuguaCAGUAGUCUGCACAUUGGUUAgacugagc
((((.((((..(((((((.((((((((.(((.(((.(......).))).))))))))))).)))))))..)))).))))

Structure
    c    cC       U        C   U   g gg 
guuc gucu  CCAGUGU CAGACUAC UGU Cag a  u
|||| ||||  ||||||| |||||||| ||| ||| |   
cgag cagA  GGUUACA GUCUGAUG ACa guu u  u
    u    UU       C        -   u   g aa 


Annotation confidence Not enough data
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Genome context
GL476397.1: 465339-465417 [-]

Database links

Mature pma-miR-199a-5p

Accession MIMAT0019505
Description Petromyzon marinus pma-miR-199a-5p mature miRNA
Sequence 11 - CCCAGUGUUCAGACUACCUGUUC - 33
Evidence experimental
454 [1]

Mature pma-miR-199a-3p

Accession MIMAT0019506
Description Petromyzon marinus pma-miR-199a-3p mature miRNA
Sequence 51 - CAGUAGUCUGCACAUUGGUUA - 71
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383