Stem-loop pma-mir-196a

Accession

MI0017099

Description

Petromyzon marinus pma-mir-196a precursor miRNA

Gene family

MIPF0000031; mir-196

Sequence

guccguggucUAGGUAGUUUCAUGUUGUUGGGguuuacgcuccagaugucCGACAGCAGAAAACUGCCCGGAccgcgcca
...((((((((.((((((((..((((((((((((((.......)))).))))))))))..)))))))).))))))))...

Structure

guc        A        CA          -    ac 
   cguggucU GGUAGUUU  UGUUGUUGGG guuu  g
   |||||||| ||||||||  |||||||||| ||||  c
   gcgccAGG CCGUCAAA  ACGACAGCcu uaga  u
acc        C        AG          g    cc 

Annotation confidence Not enough data

Genome context

GL477881.1: 105280-105359 [+]

Mature pma-miR-196a-5p

• Accession: MIMAT0019502
• Description: Petromyzon marinus pma-miR-196a-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCAUGUUGUUGGG - 32
• Evidence: experimental ; 454 [1]

Mature pma-miR-196a-3p

• Accession: MIMAT0019503
• Description: Petromyzon marinus pma-miR-196a-3p mature miRNA
• Sequence: 51 - CGACAGCAGAAAACUGCCCGGA - 72
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383